SLAM

A geometric deep learning-based method for structure-aware lysine β-hydroxybutyrylation prediction

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Please provide query protein sequence (and structure) for prediction

Species (default: General):

Sequence (Maximal 100 sequences)

Or upload a FASTA file:

Structure (Optional)

PDB chain ID (default: A):

Or upload a PDB file:

⚠️ Caveat:

★ SLAM supports a maximum of 100 sequences per prediction if PDB file is not provided.
★ SLAM supports one sequence per prediction if PDB file is provided.
★ Sequence longer than 5000 aa is not allowed currently.
★ For multiple predictions, please refer to our GitHub.
★ The input structure must adhere to PDB format.
★ The chain ID must be a single character.
★ The predicted modification sites should be further validated by experiments.

To convert mmCIF to PDB format, please refer to PDBx/mmCIF conversion service

For sequence and structure:

UniProt | PDB | AlphaFold DB

For structure prediction, we recommend AlphaFold 3.